BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012G12LP1|AL426424
(783 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig743 1512 0.0
>3x_Contig743
Length = 2201
Score = 1512 bits (761), Expect = 0.0
Identities = 778/783 (99%), Gaps = 2/783 (0%)
Strand = Plus / Minus
Query: 2 atttgttgtatca-tccgatttgaacctcawatcaattacttatctcagcaaagtggttc 60
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 813 atttgttgtatcagtccgatttgaacctcaaatcaattacttatctcagcaaagtggttc 754
Query: 61 atgaaggagataactcttgggatgccttccaaatatgcgaaaagttggcagagttgatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 atgaaggagataactcttgggatgccttccaaatatgcgaaaagttggcagagttgatcc 694
Query: 121 aagacttaatccagggacggttgactgctcctgtatcttggaaaggcgtttacggtgcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aagacttaatccagggacggttgactgctcctgtatcttggaaaggcgtttacggtgcga 634
Query: 181 gacccattgcttcaggatttgaccaaggtatttatagctgaagttttgacacagatatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gacccattgcttcaggatttgaccaaggtatttatagctgaagttttgacacagatatac 574
Query: 241 attcattttataatatatacgattttvatgagaaatatacagggttgtgtgctttcattg 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 573 attcattttataatatatacgattttaatgagaaatatacagggttgtgtgctttcattg 514
Query: 301 tcttatataacgtgcaatgttctctgcggtttgactactggcgttcttagcaactttggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcttatataacgtgcaatgttctctgcggtttgactactggcgttcttagcaactttggc 454
Query: 361 gaaggcgtcttcgtacctttagttgtaagtccggtgctttcgaatcgttaacttcaccac 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaaggcgtcttcgtaccttt-gttgtaagtccggtgctttcgaatcgttaacttcaccac 395
Query: 421 tcaacctttcatctccagcaaacgtatattctctctcagtactcctcccaacatcttctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcaacctttcatctccagcaaacgtatattctctctcagtactcctcccaacatcttctt 335
Query: 481 cttcttcatctggctctatcaatccatcgttctcgccttcttctatatcgctaatgacat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cttcttcatctggctctatcaatccatcgttctcgccttcttctatatcgctaatgacat 275
Query: 541 ccgcactatcatcatgttgatcggcatctccctctgatgatttcttagcttttgcttgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ccgcactatcatcatgttgatcggcatctccctctgatgatttcttagcttttgcttgat 215
Query: 601 ctttgagcccaaggtcagtcatcaaatgttccaaagacttctctttcctttgcttctcct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ctttgagcccaaggtcagtcatcaaatgttccaaagacttctctttcctttgcttctcct 155
Query: 661 tctctgctttctccttgattattctctccctctccgccttgtaatattgttcgtactcct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tctctgctttctccttgattattctctccctctccgccttgtaatattgttcgtactcct 95
Query: 721 ccactttactatccacaacgtttaggractcatcaaacccgtcaccagtgaaactagaaa 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 94 ccactttactatccacaacgtttaggaactcatcaaacccgtcaccagtgaaactagaaa 35
Query: 781 cgc 783
|||
Sbjct: 34 cgc 32
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6367
Number of Sequences: 1807
Number of extensions: 6367
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 783
length of database: 10,358,551
effective HSP length: 16
effective length of query: 767
effective length of database: 10,329,639
effective search space: 7922833113
effective search space used: 7922833113
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)